Description

Add nucleosomes positions and MSP position to ONT BAM files

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

bam{:bash}

:file

Sorted BAM/CRAM file

*.{bam,cram}

Output

name:type
description
pattern

bam{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

*.bam{:bash}

:file

bam file with nucleosome calls

*.bam

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml